Introduction

Getting started
Basic concepts

Language

Scripts
Processes
Channels
Operators
Workflows
Modules
Configuration
Migrating from DSL 1

Execution

Command line interface (CLI)
Executors
Caching and resuming
Reports
Metrics
Pipeline sharing
Workflow introspection
Mail & Notifications
Plugins
Secrets

Software dependencies

Containers
Conda environments
Spack environments
Wave containers

Compute & storage platforms

AWS Cloud
AWS S3 storage
Azure Cloud
Fusion file system
Google Cloud
Kubernetes

Additional integrations

Flux Framework
Apache Ignite

Contributing

Overview
Packages
Core plugins

Nextflow is developed by:

Nextflow

Index
Edit on GitHub

Index

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