We are excited to announce the first Nextflow workshop that will take place at the Barcelona Biomedical Research Park building (PRBB) on 14-15th September 2017.
This event is open to everybody who is interested in the problem of computational workflow reproducibility. Leading experts and users will discuss the current state of the Nextflow technology and how it can be applied to manage -omics analyses in a reproducible manner. Best practices will be introduced on how to deploy real-world large-scale genomic applications for precision medicine.
During the hackathon, organized for the second day, participants will have the opportunity to learn how to write self-contained, replicable data analysis pipelines along with Nextflow expert developers.
More details at this link. The registration form is available here (deadline 15th Jun).
| 10.00 | Welcome & introduction Cedric Notredame Comparative Bioinformatics, CRG, Spain |
| 10.15 | Nextflow: a quick review Paolo Di Tommaso Comparative Bioinformatics, CRG, Spain |
| 10.30 | Standardising Swedish genomics analyses using Nextflow Phil Ewels National Genomics Infrastructure, SciLifeLab, Sweden |
| 11.00 | Building Pipelines to Support African Bioinformatics: the H3ABioNet Pipelines Project Scott Hazelhurst University of the Witwatersrand, Johannesburg, South Africa |
| 11.30 | coffee break |
| 12.00 | Using Nextflow for Large Scale Benchmarking of Phylogenetic methods and tools Frédéric Lemoine Evolutionary Bioinformatics, Institut Pasteur, France |
| 12.30 | Nextflow for chemistry - crossing the divide Tim Dudgeon Informatics Matters Ltd, UK |
| 12.50 | From zero to Nextflow @ CRG's Biocore Luca Cozzuto Bioinformatics Core Facility, CRG, Spain |
| 13.10 | (to be determined) |
| 13.30 | Lunch |
| 14.30 18.30 |
Hackathon & course |
| 9.30 | Computational workflows for omics analyses at the IARC Matthieu Foll International Agency for Research on Cancer (IARC), France |
| 10.00 | Medical Genetics at Oslo University Hospital Hugues Fontanelle Oslo University Hospital, Norway |
| 10.30 | Inside-Out: reproducible analysis of external data, inside containers with Nextflow Evan Floden Comparative Bioinformatics, CRG, Spain |
| 11.00 | coffee break |
| 11.30 | (title to be defined) Johnny Wu Roche Sequencing, Pleasanton, USA |
| 12.00 | Standardizing life sciences datasets to improve studies reproducibility in the EOSC Jordi Rambla European Genome-Phenome Archive, CRG |
| 12.20 | Unbounded by Economics Brendan Bouffler AWS Research Cloud Program, UK |
| 12.40 | Challenges with large-scale portable computational workflows Paolo Di Tommaso Comparative Bioinformatics, CRG, Spain |
| 13.00 | Lunch |
| 14.00 18.00 |
Hackathon |
